Barry Kaul wroteFor anyone interested the causee of the problem was the input shaft bottoming out in the crank. :-| So if the bellhousings are the same, and the tranny came out of a CJ, then there must be a difference in the crankshafts some where along the line. #-o
Learn something new everyday. Never heard of any difference before. Did you measure to come to this conclusion?
I have had this problem where it doesn't go that last little bit but it was from the clutch spindle, turn the tranny a bit to align and it slips right in.